BtaEX0001282 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MUV6]
Coordinates
chr18:65898624-65900552:+
Coord C1 exon
chr18:65898624-65898922
Coord A exon
chr18:65899033-65899102
Coord C2 exon
chr18:65900426-65900552
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCCCTCGCGCTTCGTCCTAGGCC
3' ss Score
8.03
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GGAGAGGGCAGGGTCGCGGCCGGCTTGGCTGGAGGGTCTTGTGACCCGAGGCGCGGGCAGCGAGGACGCGCGGGAGGAGATTCGAGGCGCGGGCGGCGGAGCCAGGAGGCCCACGACTCATAGCCGGTCTCAGTTTCCCCGGGTGCCGCTTGGGCTGCCGCCGAGCCGCGCGCTCTCTGGTTTCCACGCAGCCCCGACGCGGCGCCCTTGACGGACGGGGAGTGAGGCCCGCGTCTGGGCGCCCGCCCTTTCTGCAGGTTCCAATGGCGGCGGCGGCGGCGCAGCCCGACCAGGAACAG
Seq A exon
GCCCTGGTGTTCCGGCCGGTTGGGCGTGCACTCGTGGGATCCCCACTTCTTGCAGCTAAGGGGGTGAGGT
Seq C2 exon
GGCCTAATGGCCTTTGAGGATGTGGCCGTGCACTTCTCCCAGGAGGAGTGGGGGCTCCTGGATACAGCGCAGAGGGCTCTGTACCGCCGGGTGATGCTGGAGAACTTTGCCCTCCTGGCCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039453_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSBTAT00000055447fB216
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTTCTGCAGGTTCCAAT
R:
GGGCAAAGTTCTCCAGCATCA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development