BtaEX0001334 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11433860-11446844:+
Coord C1 exon
chr13:11433860-11434043
Coord A exon
chr13:11437435-11437789
Coord C2 exon
chr13:11446693-11446844
Length
355 bp
Sequences
Splice sites
3' ss Seq
ATCTCCTTTGTTTCACTTAGGTT
3' ss Score
9.47
5' ss Seq
TACATGATC
5' ss Score
-12.8
Exon sequences
Seq C1 exon
ATTCACCTTAAAGCAAAAAGAAGAGAATAGAAGAAATGCCGATATGTTATGTGAAAAAATGAGGGAGCATTTAAGAAGAAAAGAAGACGAATATAGTAAAGAAGTTGAAGTGAAACAGCAACTAGAACTCACTTTCCGAGCAGTAGAAGTGAAACTGAAGGCTGAGAGAAATAATCTGAATCAG
Seq A exon
GTTTCTGATAGTTGTGAAAAAGCAAAAGACCTGTTGTGCAAAAACCACATGCTGCAGGAGGAAATTGCCATGCTAAGACTGGAGAGAGACGCGCTGAAAAATCAGCACCGGGAAAAGGAAGAGAACTATTTTGAGGACATTGAAATTCTCAAAGTAAAGAATGATGACCTTCAAAAGACAATAAAACTGGATGAGGAAATGTTAACAAAGACTATATCCCACTATACAGGCCAGCTTAATGCTCTGACAGCTGAGAATGCAATGCTAAACTCTAAGCTGGAGAAGGAAAAAGAAAGCAAACAAAGACTGGAAACGGAAGTGGAATCCTACCGTTCCAGACTGGCTGCTGCCTTAC
Seq C2 exon
GTTGAAGAAGAAAAGAAGCACAAAAGCAGTGAAGTGGAAGTATCAGAGAACGTATGCGATGCTGCTGATGAGAGTGGATTGTTTCAGCAGAGAAAGCGTGGAGGAAACAGCAACCAGGAGTTTCCTGCTATGCAGCATGAGGGTTCTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-27/38=26-29
Average complexity
C2
Mappability confidence:
84%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.355 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF149151=CCDC144C=WD(100=95.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCACCTTAAAGCAAAAAGAAGAGA
R:
ATCAGAACCCTCATGCTGCAT
Band lengths:
334-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development