BtaEX0001399 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3N3R0]
Coordinates
chr18:60961057-60968480:-
Coord C1 exon
chr18:60968269-60968480
Coord A exon
chr18:60966211-60966300
Coord C2 exon
chr18:60961057-60961183
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTATCTGTTACAAGTTT
3' ss Score
4.62
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
AATCCCTGCTGTGTCCGTGGCCGTAGAGGATTGTGTTTTGTGCCTGTTGAGATCCTCCCTCTGTGTGGGGCTGTGTTACAGGGAGCTCGGTGCGTTTTTCTAAGTATTGAACAGCCTATTTTCAACATTCAGGGGTTCCCAAGACTGATGTTACCTGAGAAGGAATCCCAGAGGAAGAGGAAAGCAAGGAGTCAGAAATGACTCTTTCCAAG
Seq A exon
TTTGTCAACGAGCAAAGTACCTCTCGGAGAAGGCAATGGCACCCCACTCCAGTATACTTGCCTGGAAAATCCCGTGGATGGAGGAACCTG
Seq C2 exon
GGATGGCTGACATTCCAGGATGTGGCCATAGACTTCACTCAAGAGGAGTGGGAGTGCCTGGACCTCGGTCAGCGGGAATTGTACAGGGACGTGATGTTAGAGAACTACGGGAACCTGGCCTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045581_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGTGGGGCTGTGTTAC
R:
CCACATCCTGGAATGTCAGCC
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development