BtaEX0001460 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MX70]
Coordinates
chr5:100929043-100931319:-
Coord C1 exon
chr5:100931191-100931319
Coord A exon
chr5:100929723-100929898
Coord C2 exon
chr5:100929043-100929149
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTGTCCAACTTTTAGTGA
3' ss Score
7.6
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GCAAAGGTCTCCAAAAGAAATGCCTAGCAATTACCTCTTCTGTTACACCTGCCACGCTTTGCTGCTGCATCCTGATTATTCTTATACTTGTAGCTCTAAATGTGGTGACACTTTCCGTTCTTCTGGCAG
Seq A exon
TGAGAAGCAGAGAGACAGACTTACAAGTTGTGTATGTCACCTGCCCAAAAGGATGGATTGGATTTGGGAATAAGTGTTTTTATTTTTCTGAAGACTCAGAGAATTGGACATTGAGTCAGATATCCTGTACTTCAGTGGGAGCTGTTCTTGCTCAGTTTGAAACTGAGGAGGAGCTG
Seq C2 exon
AACTTTCTGACAAGATACAAAGACATTTTTGACTATTGGATTGGCCTTAGCAGAGAATCATCACATCATGCTTGGAAGTGGACAGACAACTCTAAACTTAATGTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046324_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(26.7=45.8)
C2:
PF0005916=Lectin_C=FE(34.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGGTCTCCAAAAGAAATGCC
R:
GGGACATTAAGTTTAGAGTTGTCTGT
Band lengths:
236-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development