BtaEX0001461 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MX70]
Coordinates
chr5:100931191-100942167:-
Coord C1 exon
chr5:100941962-100942167
Coord A exon
chr5:100938414-100938496
Coord C2 exon
chr5:100931191-100931319
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAATCCTTTTTTTCAAACAGAAA
3' ss Score
7.39
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GGGGCGTAACATCTAGGGTGGAGCGCAGAAGGTGGAGGGTCGGGGAGGGAGGGTTATCTCGTACCATCTGGGGTACCATCCGCTCTATGGGTGTAATTTTCCAGGCCCCGCATCCGGTGTCTCCTTTGGCAGACGGTTGGGACCTGGATGTGGGAGATAGCCGCAGATCTATCTGCGAGGAGGAGAGGGATGTGGTCACCCCACAG
Seq A exon
AAACATGACATCAACAGAGGTGTTTTTGAAAATCTTAGAGACAGACCCTACCTATAGAGAGAACACAGAGGCGTGGAGATCTG
Seq C2 exon
GCAAAGGTCTCCAAAAGAAATGCCTAGCAATTACCTCTTCTGTTACACCTGCCACGCTTTGCTGCTGCATCCTGATTATTCTTATACTTGTAGCTCTAAATGTGGTGACACTTTCCGTTCTTCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046324_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATTTTCCAGGCCCCGCATC
R:
AAAGCGTGGCAGGTGTAACAG
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development