BtaEX0001551 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50419368-50422133:-
Coord C1 exon
chr18:50421973-50422133
Coord A exon
chr18:50420455-50420631
Coord C2 exon
chr18:50419368-50419509
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTCCCCATCCTCAGCTC
3' ss Score
9.11
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
GCGCCTTCATCGATCCCACCTTCTTCCTGAGCCGAACGGTCTCCAATGTCATCAGCTCCATTGTCTTCGGGGACCGCTTTGACTACGAGGACAAAGAGTTCTTGTCACTACTGCGAATGATGCTGGGAAGCTTCCAGTTCACCGCTACGTCTACCGGGCAG
Seq A exon
CTCTACGAGATGTTCTACTCAGTGATGAAATATCTGCCAGGGCCACAGCAACAGGCCTTTAAGGAGCTGCAGGGACTGGAGGACTTCATAGCCAAGAAGGTGGAACAAAACCAGCGCACGCTGGACCCCAACTCCCCACGGGACTTCATCGACTCCTTCCTCATCCGCATGCAGGAG
Seq C2 exon
GAGAAGGAGAATCCCAACACGGAGTTCTACAGGAAGAACCTGGTGATGACAACACTGAACCTCTTCTTTGCGGGCACCGAGACGGTCAGCACGACCATGCGGTATGGCTTCCTGCTGCTCATGAAGCACCCAGATGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.1=100)
A:
PF0006717=p450=FE(14.3=100)
C2:
PF0006717=p450=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCTCCATTGTCTTCGGG
R:
CCACATCTGGGTGCTTCATGA
Band lengths:
250-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development