BtaEX0001694 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49677487-49679352:+
Coord C1 exon
chr3:49677487-49677628
Coord A exon
chr3:49678849-49678937
Coord C2 exon
chr3:49679218-49679352
Length
89 bp
Sequences
Splice sites
3' ss Seq
CAATTTTACATGTTTTACAGGAC
3' ss Score
8.12
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TATTTTGACCAATATTTCTGACGTCCATCAAAGTATGGGCTACTGTCCTCAGTTTGATGCAATCGATGACCTGCTTACTGGGCGAGAACATCTTTACCTTTATGCCCGGCTTCGAGGTGTACCAGCAGAGGAAATTGAGAGG
Seq A exon
GACTAAGTAAATGAATAAGTGGGTTTATGTCATTTGGAGCCAGAGTTCTTCCTCTTCCACTCCTAACCATAGTCCATCCAGGACACTGG
Seq C2 exon
GTGACAAACTGGAGTATTCAGAGCCTGGGCCTGTCTCTCTATGCAGACCGCCTGGCCGGCACCTACAGTGGAGGAAATAAGCGGAAACTCTCCACAGCCATTGCGCTCATAGGCTGCCCCCCACTGGTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NO
C2:
PF0000522=ABC_tran=FE(30.3=100)
Main Inclusion Isoform:
ENSBTAT00000023982fB267
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTACTGGGCGAGAACAT
R:
CGCAATGGCTGTGGAGAGTTT
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development