BtaEX0001695 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49680425-49682721:+
Coord C1 exon
chr3:49680425-49680517
Coord A exon
chr3:49681517-49681635
Coord C2 exon
chr3:49682472-49682721
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACAGCTTGGACACTATACAGGGA
3' ss Score
1.37
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CATGGAAGAGTGCGAGGCCCTGTGTACCCGGCTGGCCATCATGGTGAAGGGCGCCTTTCAGTGTCTGGGCACCATCCAGCACCTCAAGTCCAA
Seq A exon
GGACTTCAGCATGTGAGGTCACCAGACCCATGTCAGCAGCTTCCAGTGTCCACCTGCTGGAGAACGGATGCTCCCTACCCCCTTTCCCTCTCAGTCCTCAGTTTCCTGTAGGAGAGCAG
Seq C2 exon
GTTTGGAGACGGCTACATTGTCACGATGAAAATCAGGTCCCCAAAGGACGACTTGCTTCCTGACCTGGGTCCGGTGGAGCAGTTCTTCCAGGGCAACTTCCCAGGCAGCGTCCAGAGGGAGCGGCACTATAACATGCTGCAGTTCCAGGTCTCCTCCTCCTCCCTGGCTAGGATCTTCCGGCTGCTCGTCTCCCACAAGGACAGCCTGCTCATCGAGGAGTACTCGGTCACGCAGACCACACTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000023982fB268
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATCCAGCACCTCAAGTC
R:
TACTCCTCGATGAGCAGGCTG
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development