BtaEX0001877 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017704 | ABCG2
Description
Bos taurus ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001037478]
Coordinates
chr6:37997766-38005618:+
Coord C1 exon
chr6:37997766-37997923
Coord A exon
chr6:38002918-38003022
Coord C2 exon
chr6:38005467-38005618
Length
105 bp
Sequences
Splice sites
3' ss Seq
TACACAGCATCATCTTTCAGGAT
3' ss Score
6.5
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTTGGAACTCAGTTTATCCGTGGTGTGTCTGGAGGAGAAAGAAAAAGGACTAGTATTGCAATGGAGCTTATTACTGATCCATCCATCTTGTTCCTGGATGAGCCCACAACTGGCTTAGATTCAAGCACAGCAAATGCTGTCCTTTTGCTCCTGAAGAG
Seq A exon
GATTTGGAATAGCTCAACTGGAATTCCATCACGTCCACCAGTTTTATTTGTAGTGATGCTTTCTAAGGCCAACTTGACTTCACATCCCAGGATGTCTGGCTCTAG
Seq C2 exon
GATGTCTAAACAAGGACGGACAATCATCTTCTCCATTCATCAGCCTCGTTATTCCATCTTCAAGTTGTTTGATAGCCTCACCTTGTTGGCCTCGGGAAGACTCATGTTCCACGGGCCTGCTCAGGAGGCCTTGGGGTACTTTGGAGCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017704-'20-11,'20-10,21-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(23.8=67.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000023552fB289
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCGTGGTGTGTCTGGAGG
R:
GAACATGAGTCTTCCCGAGGC
Band lengths:
253-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development