BtaEX0001887 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017704 | ABCG2
Description
Bos taurus ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001037478]
Coordinates
chr6:38019726-38021406:+
Coord C1 exon
chr6:38019726-38019815
Coord A exon
chr6:38020070-38020239
Coord C2 exon
chr6:38021282-38021406
Length
170 bp
Sequences
Splice sites
3' ss Seq
AAAGGATCTTTTATTTTCAGCAA
3' ss Score
4.54
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
AGCCGGGGTGCTCTTCTTCCTGACGACCAACCAGTGTTTCAGCAGTGTGTCAGCCGTGGAGCTCCTGGTGGTGGAGAAGAAGCTGTTTAT
Seq A exon
CAAATAAGAAGTTGTGATGACTGTCACAAGAAAAGTTTGACGGACTTGGTAGAGAGAAGGTAGTGTGTTGAACAGTATATTCAAGGTGAGGAGGTAAAGGTGACCAAGAATACAGACCAAGTCTTCAGTGGAAGGGGGAATGAAGGAGCCAGAGAGCAGCCTTAAAAAAT
Seq C2 exon
ACATGAATATATCAGTGGATACTATAGAGTGTCATCTTACTTCTTTGGAAAACTGTTATCTGATTTACTCCCCATGAGGATGTTACCAAGTATTATATTTACTTGTATAACATACTTCTTGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017704_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106119=ABC2_membrane=FE(14.2=100)
A:
PF0106119=ABC2_membrane=PD(1.2=33.3)
C2:
PF0106119=ABC2_membrane=FE(19.8=100)
Main Inclusion Isoform:
ENSBTAT00000023552fB292
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGGGGTGCTCTTCTTC
R:
TGGTAACATCCTCATGGGGAGT
Band lengths:
178-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development