BtaEX0002233 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017258 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr2:111837806-111848156:+
Coord C1 exon
chr2:111837806-111837906
Coord A exon
chr2:111838043-111838158
Coord C2 exon
chr2:111848056-111848156
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGTTTTTCTCTCAAGGGA
3' ss Score
9.93
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CAAGCCTAGTCTTTTTGGCTCTATAGCCTAAGCTTTCAGTAAGAGTACAGTTGAATTGACTTTAGTACCTTCAGAATCAGAGGGAAGAAGAAATTATCAAG
Seq A exon
GGAGTTTTGTGAGGTATTTGTTATCACCCCAGTTTTACAGTGAATCTGAAGCTTGGGGATGCTGATTGACCTGAAGCTTGGGGATGCTGATTGACTTGTCCCATGTTACACAGCAG
Seq C2 exon
CTTGTGTCTTTCAGCTGTTATGAAATGCTGCTGTGAACTTTGGTGTACAGATACCTGTTTGAGTCCATGCTTTCAGTTCTTTTGGAAGTATGCCCACAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017258-'7-4,'7-3,8-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCTAGTCTTTTTGGCTCT
R:
ACTTGTGGGCATACTTCCAAA
Band lengths:
202-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development