BtaEX0002322 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018105 | ACVR2B
Description
Bos taurus activin A receptor, type IIB (ACVR2B), mRNA. [Source:RefSeq mRNA;Acc:NM_174495]
Coordinates
chr22:11889561-11891396:+
Coord C1 exon
chr22:11889561-11889709
Coord A exon
chr22:11889886-11890040
Coord C2 exon
chr22:11891282-11891396
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTCCACCCTTGTCTGCTCAGGCT
3' ss Score
7.73
5' ss Seq
TGTGTATGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
GGCTCCCTCACGGATTACCTCAAGGGGAACATCATCACATGGAACGAACTGTGTCACGTGGCAGAGACGATGTCTAGAGGCCTCTCATACCTACACGAGGATGTGCCCTGGTGCCGGGGCGAGGGCCACAAGCCATCTATTGCCCACAG
Seq A exon
GCTGTGGTCTTGCAAGCTGGTTCTCTGGTGCCCTCCAGTGGCCACAGAAGGAAGTGCTGATTCTGTCCCTGGTTGGAGTTCTGTGCGTTGATCCTTGCTGTATTAGAGCATACATATCCTGTTAACTGTCAGAGTGACGACGTGTGTATACGTGT
Seq C2 exon
GGACTTTAAGAGCAAGAATGTATTGCTGAAGAGTGACCTCACTGCTGTGCTGGCTGACTTTGGCCTGGCTGTTCGGTTTGAGCCAGGGAAACCTCCGGGGGACACTCACGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018105-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.205
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.0=100)
A:
PF0006920=Pkinase=PD(0.1=0.0)
C2:
PF0006920=Pkinase=FE(13.1=100)
Main Inclusion Isoform:
ENSBTAT00000024095fB371
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCTCACGGATTACCTCA
R:
GAGGTTTCCCTGGCTCAAACC
Band lengths:
243-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development