BtaEX0002980 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004092 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr11:102863673-102885208:-
Coord C1 exon
chr11:102885119-102885208
Coord A exon
chr11:102870735-102870944
Coord C2 exon
chr11:102863673-102863814
Length
210 bp
Sequences
Splice sites
3' ss Seq
TCGCACTTTGCTAAATTTAGGGT
3' ss Score
5.9
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
TCTGCTGTGGGCAACTGCTCAAAGAAGCCGTGGCGGACAAGTCCAAATACAGCGATTTGATCCAGCCATTTTTCGAGAAGGAGATAGCAG
Seq A exon
GGTTGACAGGACGTTTCGGAGAGGTAGCCCTTGGCAGGAGCTTATACGCAGGGTAAGATGTTAGCTGTCAAGCCCAGAAATCAAGCCCGAGGCACCTGACTCAATGGAGAGAGACTTGCGGCCGCCCTGGAAATCTCTCTCCGAGAGGAGGATGAAGGGCAGTGGACAGCATTATCAAGGAGAACTTCAACTTTCGGCAGGACACCGCGG
Seq C2 exon
TCCCCGACAACATCATCATGAAGGTGCTGAAGCAGCGCCTGGACCAGCAGGACTGTGTTGAGAGAGGGTGGGTGCTGCACGGCTTCCCGCGAGACCTGGACCAGGCGCACCTGATGGACAATCTGGGCTACAAGCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004092_MULTIEX1-3/5=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PD(52.8=90.3)
A:
NO
C2:
PF0040617=ADK=FE(26.3=100)
Main Inclusion Isoform:
ENSBTAT00000005345fB475
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCTCAAAGAAGCCGTGG
R:
GCTTGTAGCCCAGATTGTCCA
Band lengths:
213-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development