BtaEX0003521 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17907250-17908541:-
Coord C1 exon
chr13:17908496-17908541
Coord A exon
chr13:17908088-17908180
Coord C2 exon
chr13:17907250-17907374
Length
93 bp
Sequences
Splice sites
3' ss Seq
CACCCTGACACCATTCTCAGAAA
3' ss Score
5.27
5' ss Seq
TTGGTGGGC
5' ss Score
3.03
Exon sequences
Seq C1 exon
ATGCGGCAGGAGTTGGACAGGAGTATAACTAGAGAACTAAGAGAAG
Seq A exon
AAAGCATGGAGTTCATCAACGTCTCAAGTGTCTGGTAGTGGTTAAGGTAGAACACCCAGACTCAAGCAGTCATCTTTGCGTAGCTGTCACTTG
Seq C2 exon
CTGCTGCTGAATTTGAATCTGAGTCCTATGGATTGTCTCCTCTAGGAGCTACAGATGGGTCAAATCTGTCTGAGGACCTGCTTTTGAAAACATCACAAGAATATGTACAGATTTTGAAGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'39-39,'39-38,40-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000022622fB577
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGAGTTGGACAGGAGTA
R:
TTCTTGTGATGTTTTCAAAAGCAGGT
Band lengths:
143-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development