BtaEX0004154 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004190 | ARHGAP29
Description
Bos taurus Rho GTPase activating protein 29 (ARHGAP29), mRNA. [Source:RefSeq mRNA;Acc:NM_001102485]
Coordinates
chr3:49392814-49411270:+
Coord C1 exon
chr3:49392814-49392863
Coord A exon
chr3:49407678-49407769
Coord C2 exon
chr3:49411034-49411270
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTGTTTGTTTACAGATA
3' ss Score
10.85
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTGAGTGTTGGGCGGGCGTCCGCGTTCGGGACGCGGGATGGAGCGCCGCG
Seq A exon
ATAGTCTTGACTAAAAATGTTCAAGCATTTTTGAAACACTCTATAACTTTGAGCTACTAATTTGACAGTTGAAGTAAAATAGTTTTACTGAG
Seq C2 exon
GAATTCCATTTTTTTGACTGTTATGTGAAAGGATGATTGCTTACAAACAGAAAAAGACAAAGAAAAAACGTGTTTTGTCAACAGGCCAGCTCTCAACTGATGTTACAACTTCTGAGATGGGGCTCAAGTCCATAAATTCCAACGCCATTTTGGATCCTGATTACATCAAGGAGTTGGTGAATGACATCAGGAAGTTCTCCCATATGTTACTGTATTTGAAGGAAGCTATTCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004190_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development