BtaEX0004672 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21736721-21773647:+
Coord C1 exon
chr2:21736721-21736820
Coord A exon
chr2:21767626-21767743
Coord C2 exon
chr2:21773573-21773647
Length
118 bp
Sequences
Splice sites
3' ss Seq
TATTGCTAACATTTTAACAGCAT
3' ss Score
4.86
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GATATTTAGATGGAAGCTTGAGAAGCACTGCTTACTTGATAAGAGCTGACAGATACCTGGCAGCAGAGTAGATAAAGCTCATGGCCTACCAGCTAGAAAG
Seq A exon
CATCATCTCTCAGGATTTGAAATAGCTCAGCTGGAATTCCATCACCTCCACTAGCTTTGTTCGTAGTAATGCTTCCTAAGGCCCACTTGACTTCGCATTCCAGGATGTCTGGCACTAG
Seq C2 exon
TATCCTTGCCATGAAAAAGAGGACGTGATAAGTTGTTCAGCTTATGAAATTCAAGTTACATGTAAATTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTGCTTACTTGATAAGAGCT
R:
CTGGCAGAATTTACATGTAACTTGA
Band lengths:
152-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development