BtaEX0005631 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002069 | BOLA
Description
Bos taurus MHC class I heavy chain (BOLA), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001038518]
Coordinates
chr23:28502524-28503215:-
Coord C1 exon
chr23:28503183-28503215
Coord A exon
chr23:28502996-28503043
Coord C2 exon
chr23:28502524-28502830
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTTGTTCTCCCCCAGGCA
3' ss Score
10.78
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAAAAAGGACGGATCTACACCCAGGCTGCAA
Seq A exon
GCAGTGACAGTGCCCAGGGCTCTGATGTATCTCTCACGGTTCCTAAAG
Seq C2 exon
TTTGAGACAGCTGCCTTGTGGGGACTGAGTGATGCTGCATCCCGCTATGTGACTTCAGATCACCAGACACCTCTTTCTGCAGCTGCATCTGAATGTGTCTGTGCTCCTATTAGCATAACATGAGGAGTTGGGGAGACTGGTCACCCCTGCCCACCGCGCCCCTTCCCCACCCTGACCTGTGTTCTTCTCCCTGATCCACTGTCCTGTTCCAGCAGAGACGGGGCTGGGCCGTCTCCATCGCTGTCTTTGCTTCATATGCACTGAGTAATGATGTCTTATTTCCTCTTTGAAAATAAAATCTGTATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002069-'10-13,'10-11,11-13
Average complexity
S
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=FE(37.9=100)
A:
PF066236=MHC_I_C=PD(51.7=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACGGATCTACACCCAGG
R:
AGCACAGACACATTCAGATGCA
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development