BtaEX0005968 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005189 | C11H9ORF9
Description
Bos taurus chromosome 11 open reading frame, human C9orf9 (C11H9orf9), mRNA. [Source:RefSeq mRNA;Acc:NM_001101193]
Coordinates
chr11:102950015-102956563:+
Coord C1 exon
chr11:102950015-102950119
Coord A exon
chr11:102952681-102952873
Coord C2 exon
chr11:102956388-102956563
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTCCTCCTCCCCCAGATC
3' ss Score
13
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAGCCCCGGGAAGGGCCTCCCCGCCCTTCTGGGGCCCCAGACACCGCGGAGACTCTCCGGCTTCAGGGCGCTCCGTTGAGTGAAGGCCTCTCTAGGACAACCAAG
Seq A exon
ATCGAGAAGTGCCTGCACCCACTGCCTTTCATCTAGACTAATTTGACTGCAGTGACTCTTGTTCAAGGGACAGCCGCTTTGGATAGCTTGTTACAGCTCCCCTCACGACATCCCTGGCGTGCATGTCACAAGTCAATAGGATCAAGAACCAAGTCGGTTTTGCTCTCAGGGGCTCTTGGGGCCACCAGCCAAG
Seq C2 exon
GCTCCTCCGCATCCCAGTGAGCAGGTAGAATGATGAATGAAGTAAAAGAGTCCCTGCGGAGCGTGGAGCAGAAGTACAAGATCTTCCAGCAGCAGCAATTCACCTTCATCGGGGCCCTGGAGCACTGCAGGGAGAACGCCCACGACAAGATCCGGCCCATCTCCAGCATCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005189_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF151201=DUF4561=PU(27.5=97.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACCGCGGAGACTCTC
R:
CTGCCCGATGCTGGAGATG
Band lengths:
243-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development