BtaEX0006813 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021808 | CACNB3
Description
Bos taurus calcium channel, voltage-dependent, beta 3 subunit (CACNB3), mRNA. [Source:RefSeq mRNA;Acc:NM_174509]
Coordinates
chr5:31122049-31126056:-
Coord C1 exon
chr5:31125792-31126056
Coord A exon
chr5:31124502-31124585
Coord C2 exon
chr5:31122049-31122171
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGGGGCTAATTACATTGCAGCTA
3' ss Score
4.45
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGACCGGCAGGGTTTTGGGGGGTGGGGGGAGCGGTGATTTGAGCTCGGAGCAGCTGGTCTTCGCGGCTCGCTCCCTCCTTCGCTCTCTCGCTCTCCGCCGCCGCCCGCAGGGCTGCGGGGCTCGGTGGCATCTCCCGGGCGCGGCCCGCTGTCATCGCCCCTGCCTCCGGGCCGCTCCCGCCCCCGGCGCCGCTCGCTTCCCCCCACCCGGACTCCCCCATGTATGACGACTCCTACGTGCCCGGGTTTGAGGACTCGGAGGCG
Seq A exon
CTAGAGCAGATGATTTTCAAGGCTCTGGTGAACACCTCTTCCTGACAGTTGAAGGGACAGCTGGCCACGGCCCAGGGTGCCAAG
Seq C2 exon
GGTTCAGCCGACTCCTATACCAGCCGCCCATCTCTGGACTCAGACGTCTCCCTGGAGGAGGACCGGGAGAGTGCCCGGCGTGAAGTGGAGAGCCAGGCTCAGCAGCAGCTGGAAAGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021808_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120523=VGCC_beta4Aa_N=PU(93.0=97.6)
Main Inclusion Isoform:
ENSBTAT00000029069fB1286
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCCATGTATGACGACTCC
R:
CTTGGCCCTTTCCAGCTGC
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development