BtaEX0006988 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012778 | CAPN2
Description
Bos taurus calpain 2, (m/II) large subunit (CAPN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103086]
Coordinates
chr16:27830084-27833148:+
Coord C1 exon
chr16:27830084-27830141
Coord A exon
chr16:27830230-27830350
Coord C2 exon
chr16:27833084-27833148
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCTTTCCCATCTCAGATA
3' ss Score
10.65
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GACGCAGAGATTTCTGCCTTTGAGTTGCAGACAATCCTGAGAAGAGTGCTAGCAAAGC
Seq A exon
ATACTGTGATGGCTGAACCATCATTCCCAGTCCTGCTCAAATACTGCCACCACCAACAAAGAACTGGATGAAGGAGGTTCTACTCAATGTGATTTAAAAAAAAAAAAGGTGGGGGACAAAG
Seq C2 exon
GCCAAGATATCAAGTCCGACGGCTTTAGCATTGAGACCTGCAAAATCATGGTGGACATGCTCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012778-'20-17,'20-16,21-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100)
A:
NO
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Inclusion Isoform:
ENSBTAT00000047532fB1339
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCTGCCTTTGAGTTGCAGAC
R:
GTCGAGCATGTCCACCAT
Band lengths:
114-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development