BtaEX0007001 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005034 | CAPN5
Description
calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]
Coordinates
chr15:57256223-57273213:+
Coord C1 exon
chr15:57256223-57256290
Coord A exon
chr15:57258328-57258401
Coord C2 exon
chr15:57272988-57273213
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATGACCTCTCCTACCTGCAGGGC
3' ss Score
11.22
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GCCTCTGTTCCGGTGCCGGCGCCGAGCGCTGCATCCCCGAATCCGCTGGACCCGCGGCGGCGCGGCAG
Seq A exon
GGCCTGACATGTGTCAAGCTTCCTCCCAGCCGAGACTGGCTCTGCACGTGACCTTGAGGCAGGAAACTTCCCCT
Seq C2 exon
GTGCCCAGGAGCTGCCCTCTGCTGCCTCGTCTCGGCCTCGCCTCCCGGGGCAGCATTCACCATGTTCTCCTGCGTGAAGCCCTACGAGAACCAGAACTACTCAGCCCTGAAACGGGCCTGTCTGCGCAGGAAGGTGCTCTTTGAGGACCCCAACTTCCCCGCCACCGACGACTCGCTCTACTATAAGGGCAGCCCAGGGCCCACCGTTAGGTGGAAGCGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005034_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0064816=Peptidase_C2=PU(9.1=52.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCCGAATCCGCTGGA
R:
CCTCAAAGAGCACCTTCCTGC
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development