BtaEX0007912 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017866 | CD36
Description
Bos taurus CD36 molecule (thrombospondin receptor) (CD36), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001278621]
Coordinates
chr4:40641763-40643369:-
Coord C1 exon
chr4:40643315-40643369
Coord A exon
chr4:40642563-40642666
Coord C2 exon
chr4:40641763-40642056
Length
104 bp
Sequences
Splice sites
3' ss Seq
CATTGCATTTTATTTTCAAGGTT
3' ss Score
8.95
5' ss Seq
TAAGTATGT
5' ss Score
4.58
Exon sequences
Seq C1 exon
ATGTGTAACTGTCCTCTGTGTCTAAGCTACATCTCTAGAAGATGAGCTCCTTAAG
Seq A exon
GTTTTGAAGTACATTCCAGAAAATCTCACTGGAAGGATCAGGCTTTCTTCTTCTTGATGACAGGATTCTAAGAACACAGTGGACACATAACAGATTTTCATTAA
Seq C2 exon
GAAAGAACCAGGAGAAGAGAAGCTCATTTTCAAGCTAGAGAGCTTGGCAAACACAAGCTGCAGGGTTTACTTTGGTTTAGGAATCCCACTGCCTCACTGGAGTGTCAATCAAAATTCCACAGCCATTCTTGGATACTTGGAGGTGGGGCTGACGGATGTACAGCGGTGATTTGACCCAGCACTTGAGGCAGACACAACAAGAGTCATCAGTGTTAATTTCGTTGTCCTCCAACCAGCATTCTGAAAGTGCGTTGACACTGGTGGCCTTGCACTTTTTCATCGGACTTCCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017866-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCCTCTGTGTCTAAGCT
R:
TTGTGTCTGCCTCAAGTGCTG
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development