BtaEX0008084 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30889716-30903109:-
Coord C1 exon
chr16:30903026-30903109
Coord A exon
chr16:30895534-30895582
Coord C2 exon
chr16:30889716-30889811
Length
49 bp
Sequences
Splice sites
3' ss Seq
GTTTGTCTTACTCCCAGCAGCAT
3' ss Score
5.14
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTTGCTGTAGTGAAACTAAAAAATGCAGATAAAGTATTTGCCATGAAAATATTGAATAAATGGGAAATGCTGAAAAGAGCTGAG
Seq A exon
CATCAGTTCTGGTTTCTGCGCCTCTTTCTGCTCTGGCATCTCTGCTCTG
Seq C2 exon
ACAGCATGTTTTCGTGAAGAAAGGGATGTGTTAGTGAATGGAGACAATAAATGGATTACAACTTTGCATTATGCTTTCCAGGATGACAATAACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
PF0006920=Pkinase=PD(21.8=70.6)
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Inclusion Isoform:
ENSBTAT00000029173fB1550
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATAAAGTATTTGCCATGAA
R:
GTCATCCTGGAAAGCATAATGC
Band lengths:
148-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development