BtaEX0008090 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69313272-69315356:-
Coord C1 exon
chr21:69315156-69315356
Coord A exon
chr21:69314133-69314172
Coord C2 exon
chr21:69313272-69313520
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTATTCCGTCTCCGCTGCAGCCC
3' ss Score
7.93
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGCAGTCCTCCGTGGCCGTGGGCACCCCGGACTACATCTCCCCAGAGATCCTGCAGGCGATGGAGGACGGCATGGGCAAGTACGGCCCCGAGTGCGACTGGTGGTCTCTGGGCGTCTGCATGTACGAGATGCTGTATGGAGAGACCCCGTTCTACGCCGAGTCCCTCGTGGAGACCTATGGGAAGATCATGAACCATGAA
Seq A exon
CCCCGTGAGGCAGCGCTGCCGTCCCTTCTAGAGATTACAG
Seq C2 exon
GAGCGGTTTCAGTTCCCGTCCCACGTCACAGACGTGTCCGAGGAGGCCAGAGACCTCATCCAGAGGCTGATCTGCAGCCGGGAGCGCCGGCTGGGGCAGAACGGGGTGGAGGACTTCAAGAAGCATGCCTTCTTCCAAGGGCTGAACTGGGAGAACATCCGGAACCTGGAGGCGCCCTACATCCCGGATGTGAGCAGTCCTTCCGACACGTCCAACTTCGACGTGGACGACGACGTGCTTCGGAACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.280
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.5=100)
A:
PF0006920=Pkinase=PD(5.1=85.7)
C2:
PF0006920=Pkinase=PD(16.4=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Inclusion Isoform:
ENSBTAT00000021879fB1556
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGAGACCCCGTTCTACG
R:
CTGCAGATCAGCCTCTGGATG
Band lengths:
142-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development