BtaEX0008182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033248 | CDH3
Description
Bos taurus cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001244605]
Coordinates
chr18:36045773-36096125:+
Coord C1 exon
chr18:36045773-36045872
Coord A exon
chr18:36048011-36048094
Coord C2 exon
chr18:36096005-36096125
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTATCATGCCCATATTATAGGTA
3' ss Score
7.28
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
GGGAAGCCGGCTGCCATGCTGTGAGGACGCTCAAGCAGCCCTATGGAGTGGTCTAAGAAGAACTGAGGCCTCCTGCCAACAGTTCCAACTTGCCAGCCAT
Seq A exon
GTAAAGAAACTGAGGTTAGAGATACGAAATGAGCTGCCAGAAGTCACACAGATGGTGAGTGAAGAAGCCAGGATTTGAATCCAG
Seq C2 exon
GCACAGGTTTACTGGCTGCCGCGCGCGGCCTCGGAACCGTGCCGGGCAGGCTTCGGGGAAGCTGAAGTGACCTTGGAGGCGCGAGGCGCGGAGCTGGAGCCGGGCCAGGCGCTGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033248_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF087586=Cadherin_pro=PU(42.4=68.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGTGAGGACGCTCAAG
R:
CGCCTCCAAGGTCACTTCAG
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development