BtaEX0009081 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57954313-57955464:+
Coord C1 exon
chr17:57954313-57954510
Coord A exon
chr17:57954960-57955017
Coord C2 exon
chr17:57955271-57955464
Length
58 bp
Sequences
Splice sites
3' ss Seq
AATCTTTGTTCCTCACCCAGGGA
3' ss Score
6.91
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGATCACGGACTTGGAGGAGCAGCTAAACCAGCTGACGGAGGACAATGCCGAGCTCAACAACCAAAACTTCTACTTGTCTAAACAACTCGATGAGGCCTCTGGTGCCAACGACGAGATTGTGCAGCTGCGAAGTGAAGTGGACCATCTCCGCCGCGAGATCACTGAGAGGGAGATGCAGCTCACTAGCCAGAAGCAA
Seq A exon
GGATTGAACCCGGGCTTTCAGCAGGGAGAGCTGGGAGTCCTAACCACTGGACTGCCAG
Seq C2 exon
ACGATGGAGGCGCTGAAGACCACGTGCACAATGCTGGAGGAGCAGGTCATGGACCTGGAGGCCCTGAACGACGAGCTGCTGGAGAAGGAGCGGCAGTGGGAGGCCTGGAGGAGTGTCCTTGGTGACGAGAAGTCCCAGTTTGAGTGTCGGGTTCGAGAGTTGCAGAGGATGCTGGACACCGAAAAGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=1.000 C2=0.368
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(40.8=97.0)
A:
NO
C2:
PF0149614=V_ATPase_I=FE(40.8=100)
Main Inclusion Isoform:
ENSBTAT00000061505fB1732
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGCAGCTGCGAAGTGAA
R:
TCCATGACCTGCTCCTCCAG
Band lengths:
134-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development