BtaEX0009712 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013760 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chrX:61079238-61085094:-
Coord C1 exon
chrX:61084911-61085094
Coord A exon
chrX:61081993-61082046
Coord C2 exon
chrX:61079238-61079309
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTTACTTGATTGGTCTAGGTG
3' ss Score
6.95
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGTGATGGTGCACAGGGCTTCCCCGGTGAAAAGGGGTTACCAGGACTTCCTGGTGAAAAAGGCCACACTGGTCCAACTGGCCCCCCAGGAATTGGGCTACCAGGGGCTCCTGGACCTCGTGGACTTCCTGGAGATAAAGGAGTAGATGGATTACCAGGGCAACCAGGCCCCCGTGGAGTTCCAG
Seq A exon
GTGACTGCTGCTGCAAGGAGGAGGTTGGGAAAACAGACTTAGACACAGAGGGAG
Seq C2 exon
GTATCACCTTGCCTTGTATTATTCCTGGACCGTATGGTCCATCAGGACTCCCAGGAGCTCCCGGATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013760_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(36.2=68.0)
Main Inclusion Isoform:
ENSBTAT00000018292fB1849
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCGTGGACTTCCTGGAG
R:
GAGCTCCTGGGAGTCCTGATG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development