BtaEX0009862 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015253 | COX19
Description
Bos taurus COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) (COX19), mRNA. [Source:RefSeq mRNA;Acc:NM_001109966]
Coordinates
chr25:42320150-42322247:+
Coord C1 exon
chr25:42320150-42320323
Coord A exon
chr25:42320483-42320595
Coord C2 exon
chr25:42321342-42322247
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTTTCTGGGGCGCCTTGTAGGTT
3' ss Score
6.02
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CGGATAAGCCTGGAAGGGGAAACTGGCTTTTGACGTATCTGACTTCTTTTTTCTGGTGATGCCTGAACACCACGTGTCTTTCTGAACCGTATTGGGTGACACTTGTACAGTCAGATGTTTAGTTTCAAGAAGTCATCTGCTGTAACCGAGGAGCGGGCCGTCTGCCCTTGTCAG
Seq A exon
GTTCAGAACCTCAGTGGAGACCCTGGACCTGCCCTGTGACTGCCTCCCTGGCCCCCAGTCAGCTGAGTTTTGTCCCGGTGTGGCCAGTGGGAGGGGGTGCCAGGAATACCCAG
Seq C2 exon
TAAGGAGTTGCCGAAGCCTTGGTGGACTTGTCGGGAGCGTGCGACAGGGCTCCCAGTGGCCTGGTTGGCAGCAGCAGGAACGACTGTTAGGGTTTGGCCACAGCATCAGTTCCTGCCTGGGAGTCCCTGCTGAGGGAGTCACGAGTGGAGCAAACGTTCCAGCACAGGAAGGGGACAGCCCTCCTCCCAGCCCTGGCCCGTGTGGAAGGGCGGGCCATCCGGGCATCCGTGTGTCTGGAGGTGGGTGGGCAGTGTTAGGTGGAACGGGTTTGCCTGTTCTGGAGGACGCCCCAGAAAGCACTCAACCAACAGCCGAAACCTCTGGGATGTTGCCCGTGGCACCTGCCCTGATCTGCCCCAAGGAGGAGGCGTCACTGCTGTTTTCTCTGAGCGCATCACCTCCGTCTCTGAGGACACACCGATGTGCCCGGCCTGAGGGCCAAGCCTGGTGTGAGGACCCACGGTGCCCTCCCCGAGGACGGGCGAAGGGCTGCTGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015253_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGAAACTGGCTTTTGACG
R:
ACCCTAACAGTCGTTCCTGCT
Band lengths:
253-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development