BtaEX0010052 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008944 | CRB1
Description
Bos taurus crumbs homolog 1 (Drosophila) (CRB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192482]
Coordinates
chr16:78273776-78320235:+
Coord C1 exon
chr16:78273776-78273902
Coord A exon
chr16:78313355-78313649
Coord C2 exon
chr16:78320020-78320235
Length
295 bp
Sequences
Splice sites
3' ss Seq
TTTGGGTTCTGTGTGTCCAGGAC
3' ss Score
7.32
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTGTGACAAGGACATCGACGAGTGCGCGTCCGACCCCTGCCTGCACGGCGGCCGGTGTCACGACCTGCTGAACGGGTTCCGGTGCGTGTGCGCGCTGGCCTTCGCCGGGCCGCGCTGCGAGCTGGAC
Seq A exon
GACCCAGTGAACCGCCGGAGACGGGGAAAGCGTTCAGTAACCACACAGGATCCAGGACCCAGTGAACTGCCTGAGACGGGGAAAGCGTTCAGTAACCACACAGGATCCAGGACCCAGTGAACCGCCGGAGACGGGGAAAGCGTTCAGTAACCACACAGGAGTGCTTGGGTGAGTGCATGAACAGCTGCGTGCACGCAGGTCCCCACCAGCAGAGCTCCTGGCTGTAAAGAAGTCTTCCCACCACTGGAAAGGATGGAATCGATGCGTGAAATAGAGCCATGAACACTTCAAGTGG
Seq C2 exon
TTGGCAGATGACTTGCTGTCGGACGTCTTCACCACCATCGGTTCAGTGACATTAGCCTTGTTGCTGATCCTCTTTCTGGCAGTGGTGGCTTCTGTTCTCGCCTCCAACAAAAGGGCAACCCAGGGCTCCTACAGCCCGAGCCGTCAGGAAAAGGACAGCTCTCGTGTGGAGATGTGGAGCGTGATGGACGCCCCTGCAGCAGAGAGGCTGATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008944_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.821 C2=0.113
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(0.1=0.0),PF0000822=EGF=WD(100=72.1)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000033880fB1909
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGGACATCGACGAGTGC
R:
TCCACACGAGAGCTGTCCTTT
Band lengths:
293-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development