BtaEX0010166 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003162 | CRYZ
Description
Bos taurus crystallin, zeta (quinone reductase) (CRYZ), mRNA. [Source:RefSeq mRNA;Acc:NM_174025]
Coordinates
chr3:70246971-70252248:+
Coord C1 exon
chr3:70246971-70247021
Coord A exon
chr3:70247549-70247692
Coord C2 exon
chr3:70252125-70252248
Length
144 bp
Sequences
Splice sites
3' ss Seq
GGGTATTTACACGTTTCTAGAGG
3' ss Score
4.34
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGCAATCTCGGGGGACGCTCGCAAATTTTGATTTTCCACTCTAGAACCGG
Seq A exon
AGGAGACTTATCTCAGTGACCAAGGAAGGTGTATTAATGATTCAACCACTGAAGGGCTAAAGTTTGGACTGATTGTCAGCAACTAGTGGAAATGGCTTCCCACGTGGCACAGTGCTAAAGAATCCGCCTGCCAACGTAGGACAG
Seq C2 exon
TATCTAGATCACCATGGCAACTGGACAGAAGTTGATGAGAGCTATTAGAGTTTTTGAATTTGGTGGACCAGAAGTGCTGAAACTCCAGTCGGATGTTGCTGTACCAATTCCGAAAGACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003162_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082407=ADH_N=PU(1.4=5.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAATCTCGGGGGACG
R:
GGTCTTTCGGAATTGGTACAGCA
Band lengths:
170-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development