BtaEX0010328 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016420 | CTNNB1
Description
Bos taurus catenin (cadherin-associated protein), beta 1, 88kDa (CTNNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076141]
Coordinates
chr22:13875959-13876695:+
Coord C1 exon
chr22:13875959-13876019
Coord A exon
chr22:13876127-13876257
Coord C2 exon
chr22:13876468-13876695
Length
131 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTGCTTACTTGTCAGGCT
3' ss Score
6.73
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGTCTCTGAAGTACACCATACTACCTTTTTGAAAATCTTGCGTGGACAATGGCTACCCAAG
Seq A exon
GCTACCTTTTGCTCCATTTTCTGCCCACTTCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCACTGATTCA
Seq C2 exon
CTGATTTGATGGAGCTGGACATGGCCATGGAGCCAGACAGAAAAGCAGCCGTCAGTCACTGGCAGCAGCAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACCACCACAGCTCCTTCTCTGAGCGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCACCCAAGTCCTGTATGAGTGGGAACAGGGGTTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016420_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.701
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000021838fB1957
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTTGCGTGGACAATGGCT
R:
TGAGTGAAGGACTGAGAAAACCC
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development