BtaEX0011570 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30673011-30675880:+
Coord C1 exon
chr4:30673011-30673154
Coord A exon
chr4:30674057-30674239
Coord C2 exon
chr4:30675779-30675880
Length
183 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTTTGCTTTACAGGTG
3' ss Score
12.48
5' ss Seq
GAGGTGTAT
5' ss Score
1.65
Exon sequences
Seq C1 exon
GTCAATCTCACTGAGCTGAAAGCCTTTCCCAACCCTCCAAATGCAGTCACCAATGTTACTGCGGCTGTGATGGTCCTTCTGGCTCCCCGGGGCAGAGTGCCGAAAGACCGGAGTTGGAAAGCAGCAAAAGTCTTCATGGGGAAG
Seq A exon
GTGGATGATTTTTTACAAGCGTTAATTAACTATGACAAAGAGCACATTCCAGAGAATTGTCTAAAAGTGGTGAAGGAACAGTATCTGAGAGACCCTGAGTTCAACCCAAACCTGATTCGGACCAAATCTTTTGCAGCAGCTGGTCTCTGCGCCTGGGTCATCAACATCATGAAATTCTATGAG
Seq C2 exon
GTCTACTGTGACGTGGAGCCCAAACGCCAAGCATTAGCCCAGGCAAACTTAGAACTGGCTGCAGCTGCTGAGAAATTGGGGGCTATCAGGAAAAAGCTAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078_MULTIEX1-2/8=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.6=100)
A:
PF127772=MT=FE(17.4=100)
C2:
PF127772=MT=FE(9.6=100),PF060097=Laminin_II=PU(22.1=55.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATCTCACTGAGCTGAAAGC
R:
AGCTTTTTCCTGATAGCCCCC
Band lengths:
242-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development