BtaEX0011632 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31175252-31183163:+
Coord C1 exon
chr19:31175252-31175677
Coord A exon
chr19:31175902-31175981
Coord C2 exon
chr19:31183044-31183163
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCATTTCCTCCAAAGAAA
3' ss Score
7.29
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ACCAATCTGACCGAGCTGAAGTCCTTCGGTTCCCCGCCGCCGGCGGTGAGCAATGTCAGCGCAGCGGTGATGGTGCTCATAGCCCCCAGGGGCAAGGTGCCCAAGGACCGCAGCTGGAAGGCCGCCAAGGTCACCATGGCCAAGGTGGACGGTTTCCTGGACTCCCTCGTCCACTTTGATAAGGAGAACATTCACGAGAACTGCCTCAAGGCCATCAGGCCATATCTGCAGGACCCCGAGTTCAATCCGGAGTTCGTGGCCACCAAGTCTTACGCAGCCGCAGGCCTCTGTTCTTGGGTCATAAACATCGTGAAGTTTCACGAGGTGTTCTGTGATGTGGAACCCAAGCGCCAAGCACTGAGCAGGGCCACCTCGGACCTCGCTGCTGCCCAGGAGAAGCTGGCGGCCGTTAAAGCCAAGATTGCT
Seq A exon
AAAGAAAAGATGACAGATGGATACGTATAATAAATGAATGGTATTATCCATGGAACCAGCTGCTATCTTATTAGCCACAG
Seq C2 exon
CACCTTAATGAGAACCTGGCCAAACTCACAGCTAAGTTTGAGAAAGCAACAACCGACAAACTCAAATGTCAGCAAGAAGCTGAAGCGACCGCAGGCACCATCTCCCTTGCAAACCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'68-78,'68-77,69-78
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(41.0=100)
A:
PF127772=MT=PD(2.0=50.0)
C2:
PF127772=MT=FE(11.3=100)
Main Inclusion Isoform:
ENSBTAT00000006131fB2199
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTCTGTTCTTGGGTCAT
R:
TTAGCTGTGAGTTTGGCCAGG
Band lengths:
180-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development