BtaEX0011749 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014319 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr16:40745024-40775856:+
Coord C1 exon
chr16:40745024-40745260
Coord A exon
chr16:40773496-40773540
Coord C2 exon
chr16:40774645-40775856
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGTTTTTTTGTAGACC
3' ss Score
10.54
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GTCCCCCCCTCCAAGCCCCACCACCCAGAGGAGGCCGACGCTGAGCGCACCTCTCCCACGACCGACGTCCGGCCGGGGACCTGCACCCGCCATCCCCTCCCCGGGACCCCACTCAGGGGCGCCGCCAGTGCCATTCCGGCCGGGCCCATTACCTCCTTTCCCCAACAGCAGTGACTCGTTCGGGGCGCCTCCGCAGGTTCCGTCTCGGCCCACTAGGGCCCCTCCCAGCGTCCCGAG
Seq A exon
ACCTCCTTGCTCCACTCACTGAAGTGTTACAGAAGTAAGATGGAA
Seq C2 exon
GCGACCCCCTCCTGCAGTTCCTGGACGACCATCCTAACCCCCATCATTCATCTCCTTTTGTGTCCAACAACATGTCTGTCTGTGGTATTTAAAAGCCTTTCATTTGCACTGTATGTCATATGTACAGAAAAACTTCTATTTTTGATCCATGTCTATAATAAAAACAAAGTTTATTCTATATAAAAAATGAAATGTGTTCTGTTTCTTTTTCTAAAGAAGATCCAAGTTAAAATAGGAGTTTGTTTCAACTAAAACCAGGTATGGTGAAAAATACATAATTTGACCTGCAAAGGAGCTTCAATTGAAAATGACTGATTTTAAGTTCTTAAAGCATTGTGATTTAGGATGATATTTGGTGGACAATAGTAATCGATCTTCAGTTGAAATGTCTGTCCAATAGAAGAGTGAAAGATGAAGCAAAAATCCTGGGTGTCTAGAAAAGACACAGAGAACCGAATAAATTCAGTCTGCTCCCAGGAATCTCCCAGTGACATTTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014319_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCCTTTCCCCAACAGCA
R:
TGATGGGGGTTAGGATGGTCG
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development