BtaEX0011907 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017922 | DOLPP1
Description
Bos taurus dolichyl pyrophosphate phosphatase 1 (DOLPP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192041]
Coordinates
chr11:99563895-99567981:+
Coord C1 exon
chr11:99563895-99563996
Coord A exon
chr11:99566399-99566578
Coord C2 exon
chr11:99567881-99567981
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTCTGCACGACCCAGGGT
3' ss Score
3.44
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TGGGCGAAGCCCGGTCTCCGGGTAAGATGGCAGCGGACGGACAGTGCTCGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTCGAATATCCTGCAG
Seq A exon
GGTTCCTGGGCACCAGGGGGATAGCTGAGAGACCCAGAGTCTCAGGGCTGGGCCACTGAGTGGATGAGGGGACAGAGCCCCGGAAGACGGAAGAGCCTCACCTCGGTGTCACTCAGCGGGCCTGGGGCAGCACTATCTGACCAGTTCTCCAAGGCCAGTTCCAAGCCTGCCCTACCCTGG
Seq C2 exon
GTGACCTCTCTGGCCACGTCCTCGCCTACCTGAGCCTCAGCCCCGTATTTGTCATTGTTGGTTTCGTGACCCTCATTATATTCAAGCGGGAGCTGCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017922_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.316 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0156916=PAP2=PU(0.8=2.9)
Main Inclusion Isoform:
ENSBTAT00000023834fB2252
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCCGGGTAAGATGGCAG
R:
GTGCAGCTCCCGCTTGAATAT
Band lengths:
188-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development