BtaEX0011985 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015330 | DPP4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MU57]
Coordinates
chr2:34558833-34569731:+
Coord C1 exon
chr2:34558833-34558897
Coord A exon
chr2:34564957-34565080
Coord C2 exon
chr2:34569659-34569731
Length
124 bp
Sequences
Splice sites
3' ss Seq
CATTTGTTCTATTATCCCAGAAT
3' ss Score
5.86
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACTCCGTGTACACAGAACGTTACATGGGTCTTCCAACTCCAGAAGACAACCTTGACTCTTACAGG
Seq A exon
AATATGCCAAAGGGAGAGAGACCTTCAGATTTAAGCCAAACCTTAACTTGTTTGTTGAGTGCTGATAAAATGTTGACTGCTGTGTGATCTTTAAAGAAGCCAGTGTTGCTGGGTGAGGCCTGAG
Seq C2 exon
AATTCAACAGTCATGAGCAGAGCTGAAAATTTTAAACAAGTTGAGTACCTCCTTATTCATGGAACAGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015330_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(10.1=100)
A:
PF0032616=Peptidase_S9=PD(13.6=69.0)
C2:
PF0032616=Peptidase_S9=FE(11.6=100)
Main Inclusion Isoform:
ENSBTAT00000056886fB2259
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCGTGTACACAGAACGTT
R:
CATCTGCTGTTCCATGAATAAGGA
Band lengths:
138-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development