BtaEX0012076 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016692 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr15:28557133-28561025:-
Coord C1 exon
chr15:28560785-28561025
Coord A exon
chr15:28558820-28558958
Coord C2 exon
chr15:28557133-28557279
Length
139 bp
Sequences
Splice sites
3' ss Seq
CGTGTCTAATAAATCCCCAGGTG
3' ss Score
8.22
5' ss Seq
CAGGTCAAA
5' ss Score
2.44
Exon sequences
Seq C1 exon
GCGCCCAAGAAGGAGCTGCAGAACGGTGTCATCCGTGGCTACCAGATCGGCTACAGAGAGAACAGCCCGGGTAGCAACGGGCAGTACAGCATCGTGGAGATGAAGGCCACTGGGGACAGCGAGGTCTACACCCTAGACAACCTCAAGAAGTTCGCCCAATATGGCGTGGTGGTCCAGGCCTTCAATCGGGCAGGCACGGGGCCCTCATCCAGCGAGATCAATGCCACCACCCTGGAGGACG
Seq A exon
GTGATGCTGATGCTGCTGGTGCAGGGAGCACCTGTGAGAACCCGAGCACTAACAGCCAGGTCATTGCCCATAAAAGGACCCAAGACTCACGGAGGCTAAGAACCTGTCCAGATTGCCCATCTGATGAAGAAGAGCCCAG
Seq C2 exon
TGCCCAGCCAGCCCCCCGAGAACGTCCGGGCCCTGTCCATCACTTCCGACGTGGCCGTCATCTCCTGGTCGGAGCCCCCGCGCAGCACCCTCAACGGCGTCCTCAAAGGCTATCGGGTCATCTTCTGGTCCCTCTACGTTGACGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016692-'18-17,'18-16,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=1.000 C2=0.577
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(75.8=85.2)
A:
NO
C2:
PF0004116=fn3=PU(52.3=92.0)
Main Inclusion Isoform:
ENSBTAT00000030167fB2279
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACCAGATCGGCTACAGA
R:
CACGTCGGAAGTGATGGACAG
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development