BtaEX0013233 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006448 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr25:18668787-18672630:-
Coord C1 exon
chr25:18672564-18672630
Coord A exon
chr25:18671783-18672026
Coord C2 exon
chr25:18668787-18668854
Length
244 bp
Sequences
Splice sites
3' ss Seq
TTCTCACCCATTAAATGTAGGTA
3' ss Score
6.22
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
Exon sequences
Seq C1 exon
GCGACTTCCGGCAGTTGGGCTGAGGCTAGAAAGGAACGTCAGGGATGGCGACCAAGAGACTCGCACG
Seq A exon
GTAGCAGAAAGGACTGTTTTGTACAGTTGTTGAGGATGAAATGAGATCACCATCTTGATTCAGTGCGTAATATGTCCGTAAAGAATCTGCCTGCAGTTCAGGAGACCGGGATTTGATCCCTGGATTGGGAAGATCCCCTGGAAAAGGAAATGGCACCCCACTCCAGTATTCTTGCCTGGAGAATTCCTTGGACAGAGGATTCCAAGAATCAGAAGACTGACTAAACTACCACCACCATTATATG
Seq C2 exon
GCAGCTTGGATTAATTAGGAGAAAATCAATTCCACCAGCAAATGGAAACCTAGGAAGAAGCAAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006448-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000008456fB2515
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCGGCAGTTGGGC
R:
AGATTTGCTTCTTCCTAGGTTTCCA
Band lengths:
132-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development