BtaEX0013415 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50948228-50960298:+
Coord C1 exon
chr3:50948228-50948288
Coord A exon
chr3:50949525-50949585
Coord C2 exon
chr3:50960245-50960298
Length
61 bp
Sequences
Splice sites
3' ss Seq
ACTATTTGCTTTTCTTTTAGGTT
3' ss Score
10.85
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
GCTTGAAAAGGAATATACTACAATAAAAACTAAAGAAATGGAAGAACAAGTTGAAATTAAA
Seq A exon
GTTCCATGAGTAAGAGTAATATTAAATCATACCCTCCACTTCAACCTCCTGAAAGTAAAAA
Seq C2 exon
AGGTTACGAACAGAAAATAGACTTTTAAAACAGCGCATTGAAACATTAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363-'17-15,'17-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000040289fB2556
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAAGAAATGGAAGAACAAGTTGA
R:
TTCTAATGTTTCAATGCGCTGT
Band lengths:
84-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development