BtaEX0014238 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18012076-18016553:-
Coord C1 exon
chr7:18016437-18016553
Coord A exon
chr7:18014294-18014487
Coord C2 exon
chr7:18012076-18012204
Length
194 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCTTTGGACACTTAGGTT
3' ss Score
5.61
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ACCTGGATGAGTGCTCCTCCAGGCAGCACAACTGCCAGTTCTTCTGCGTCAACACCATCGGTGCCTTCACCTGCCGCTGTCCCCCTGGCTTCACCCAGCGCCACCAGGCCTGCTTTG
Seq A exon
GTTGTTTCAGCTCTTGGCTATTCTGAATAATGCTGCAATGATCATGGGGCTGTGGATATCTTTTCGAATTAGTGTTTTCATTTTCTTTGGATAAACACACCCAGAAGAGGAATCACTAGGAGGCCTACAATTTTAAAACCGAATTAATGACAAGCCTCACTGAAAGAGGAAATTTGAGCAAAGGTTTGAAGGAG
Seq C2 exon
ACAATGACGAGTGCTTGGCCCAGCCTGGCCCATGTGGTACCCGTGGGCGCTGCCACAATGCCCCAGGCAGCTTCAGCTGTGAGTGCTATCAAGGCTTCACCCTGGACAGCTCCGGTCATGGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'61-67,'61-66,62-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NO
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
ENSBTAT00000035613fB2722
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGATGAGTGCTCCTCC
R:
CTTTGCAGCCATGACCGGAG
Band lengths:
246-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development