BtaEX0014435 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013926 | FCGRT
Description
Bos taurus Fc fragment of IgG, receptor, transporter, alpha (FCGRT), mRNA. [Source:RefSeq mRNA;Acc:NM_176657]
Coordinates
chr18:56420050-56421060:+
Coord C1 exon
chr18:56420050-56420319
Coord A exon
chr18:56420382-56420706
Coord C2 exon
chr18:56420944-56421060
Length
325 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCCCTCTGCTGCAGCAA
3' ss Score
9.49
5' ss Seq
CAGGTCCCT
5' ss Score
0.68
Exon sequences
Seq C1 exon
AGCCACCCTCCATGCGCCTGAAGGCCCGACCCGGCAGTCCCGGCTTCTCTGTGCTCACCTGCAGCGCCTTCTCCTTCTACCCACCTGAGCTGAAGCTGCGCTTTCTGCGGAACGGGCTGGCCATTGGCTCTGGTGAGATAGACATGGGCCCCAACGGCGACGGCTCCTTCTACGCCTGGTCATCACTCACAGTCAAGAGTGGCGACGAGCACCACTACCGCTGCGTGGTGCAGCACGCGGGGCTGGCCCAGCCCCTCACGGTGGAGCTGG
Seq A exon
CAACCCTTCCTGAGTCTGACTGCTTTCTGCCCCACCGCTGCCAGTTCGTCCAAAGCCTGACAGCCTCTTGTCCTGCGTTGCTTGCCTCCCCACGTCTGAGTGCCTTCCATCCTGGTGCTGCTGGCCTCGTTGATTCTGGCCACTCGTTAACTGCTATGGGACGTCCTCCCTAAGTCTGACCACCTTCCGTCCTGCTGCTGCTAGTCTTCAGGGAGTCTGACCATTCGTTGTCTGCTGCTGCCAGGCCTCTATGAGTCTGATGTTTTACTGCTCTGTGCCCACCCCTCCTCTCCAAGTTGGAACACCGCCCACTCTGCTGCTACAG
Seq C2 exon
AATCACCAGCCAGGACCTCGGTGCCAGTGGTGGGGATCGTCATCGGCTTATTCCTGCTCCTGACAGTGGCTGCGGGAGGAGCTCTCCTGTGGAGAAGGATGAGGAAGGGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013926_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=86.8)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000018500fB2754
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCTCTGTGCTCACCTG
R:
CAGCCCCTTCCTCATCCTTCT
Band lengths:
342-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development