BtaEX0014646 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20941179-21095877:-
Coord C1 exon
chr24:21095813-21095877
Coord A exon
chr24:20941782-20941886
Coord C2 exon
chr24:20941179-20941246
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTTGGTTCTCTTGAGGTG
3' ss Score
2.35
5' ss Seq
TGAGTTCCG
5' ss Score
-24.19
Exon sequences
Seq C1 exon
GCGGGGCAAGAAGCACAGCATCATCCTAAGGACACAGCTGTCTGTGAGGGTCCATGCCTGCATCG
Seq A exon
GTGAGCATCAGATTCCATGGAAAAGAAAGCAGTTTGAAGCTTCCTGAGCCCGACTGTGGAGAGTATGGTGATGCAAGCCTGTGAGACGAGGAAACAGAAGGATGA
Seq C2 exon
AAAAACTGTACAACTCCACTGGACGAGATTTAAGAAGGGCCCTCTTCTCCCTGAAGCAGATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581_MULTIEX2-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PU(10.9=56.5)
A:
NO
C2:
PF063718=Drf_GBD=FE(18.5=100)
Main Inclusion Isoform:
ENSBTAT00000061003fB2791
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCACAGCATCATCC
R:
CTGAAATATCTGCTTCAGGGAGA
Band lengths:
128-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development