BtaEX0014655 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001500 | FIGNL1
Description
fidgetin-like 1 [Source:HGNC Symbol;Acc:HGNC:13286]
Coordinates
chr4:5372168-5374367:+
Coord C1 exon
chr4:5372168-5372658
Coord A exon
chr4:5373563-5373638
Coord C2 exon
chr4:5374273-5374367
Length
76 bp
Sequences
Splice sites
3' ss Seq
ATATGACTGGTTCTTTGTAGGGT
3' ss Score
6.93
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TCCAGGAGCAAGTCCTCCAGGGCCAACGGAAGAAAAGGACGCGCTGCCTGAGTGACGGGGGGATCTGAGATGCGGATTCTAACTCCCAGATTGAGTCTAAAAATGTGTGTGAGGGAGTCCCGTTCCCAAAGGAAATAACCAGACCAACTTACCTAGGGAGCTAGTCAGAGCTTGGTAACGGAGACACGGGGGCGGGGCCGGGGCGGGACTGCGAGCTCAGACCCCGCCCCCGGAAGCCTACAGCGTTTCCCCGCCCGCGCTCTCAGTGTCTCACAGACTCACGCACGCCGGGATGCACGCACGCACGCAAGGCGGGGCTGAACCGGCAGCAGTGCGCAGGCGCACACAGTCCGCGCGCTTTTCGGAAGCCGCAGGTCGGCGGGGAGAGCTTTGGGAGGCTAAGGCTGGGGTGGGGCGTGGGGCCGGGAAGGCTGAAGGGCGAGTGGCTCCACGTGCGGGCAGGCCGACCCGGGAGTGTGGTCTCGCGGCTG
Seq A exon
GGTTCATGGGAGAAAGCTGTATTAAGCATGGCTCTTGCACCAAAAGAACCTGCTGATTATTAAGCTATATTTACAG
Seq C2 exon
ATAAAACTGATGGCCCAGCAATAGGAAGAAGCTACCATGACATTGTTCCTCTGATTGTCCTTAGAGACCAGACTTACACCTATCTGCTTGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001500_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCCGCGCGCTTTTC
R:
TCCTATTGCTGGGCCATCAGT
Band lengths:
172-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development