BtaEX0015096 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100903350-100915351:+
Coord C1 exon
chr11:100903350-100903488
Coord A exon
chr11:100904385-100905238
Coord C2 exon
chr11:100915246-100915351
Length
854 bp
Sequences
Splice sites
3' ss Seq
TACTGCTTGATTCCTAACAGAAA
3' ss Score
6.71
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CAGGGGAGCCGAGCGGCGGTGGCGGCGGCGGCGGGCGGCGGCGGCGGGGGCGGTAATGGCGGAGCTGGTGCAGGGGCAGAGCGCTCCGGTGGGGATGAAGGCTGAGGGCTTCGTGGACGCTCTGCACCGGGTCCGGCAG
Seq A exon
AAAGCTACAGGACCCATTGTATTAGAAGAAAGTCTCAACTTGGTCGCTTGAAGATACGGTCTTTACACCTCTTTCCAGTATTCCAGGGGAGGGAACCCTACCTGTTTCCCAGATACTGACTTTTCATTTTAATACTGATGCTCCTGTAGACATTACATTGGATCCCAGAAGTTTCCAAACCTGTGGTTCAGCCTAAAATTTTATCCGATGACTTGTTACTTACTGCCTAGGCACCAAGCAATATGCTAGTGAGTATCCATCTTACTTAGACTTCAGAGCCAGCCAGTGGCTGTAATGGATGAACAGTGCCATCCAGCTCCCCTTCCACCACTCTGCTTGCCGGCGTGTTACACTGCTCTCTACAGTACAGGGTCCTGAACCTTGTTTCTCACTGGCTACTAATATGTAATGGCTTTTCACTCTGTGCTGATGTGTGACAATCACCTTGTCGGCCTCTGTATCCAGGAAGAAGTATAGTCACTACCCTAAAGAGCTCAGATCCTCAGTTTGCAGAAGGCCTATAGTTGAACATAAAATGAATTTTGAACCTTTGAGAAGACTTTCTGCTTCTCTTGAGCCAGTGGTTGAACTCGTATTCTTGGACAACCTGCTCAAGAGGGAGAGAGACCCTCTGTTTATATGCTGACCTAATGTGGATTGTTGAAGCAGTGGTGTTTACTACTAGCAGAGGAAACTTCACTGGAACTGTTCCCAGCTCTGAAATGCACCATTGACTGGAGCAGTTGTAAGCCCAATGGAGACAGTGCTGTAAGTGTATCACTTCTGAATGTTAACAGCTGGAGGTCGATACTATCTCCAAGGACTGATGGCCTTAAAAACTAAAGAAAACACAG
Seq C2 exon
ATTGCTGCTAAAATTGACTCAATCCCTCACTTGAATAACTCCACACCTCTGGTGGACCCCTCAGTGTACGGCTACGGAGTGCAGAAGCGGCCCTTGGATGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000017383fB2877
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCGGTAATGGCGGAG
R:
CTCCATCATCCAAGGGCCG
Band lengths:
199-1053
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development