BtaEX0015572 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012772 | GFI1B
Description
growth factor independent 1B transcription repressor [Source:HGNC Symbol;Acc:HGNC:4238]
Coordinates
chr11:103039731-103047391:+
Coord C1 exon
chr11:103039731-103039814
Coord A exon
chr11:103046820-103046974
Coord C2 exon
chr11:103047272-103047391
Length
155 bp
Sequences
Splice sites
3' ss Seq
ACGAATCATATTGAATCTAGGGT
3' ss Score
3.91
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTGCCGAGAGTCACGAATTGACCCGGTGGTGCTGATACGCAGCGAGACGCAGCCAGGTTCTTCCCGCAGACCGGCTCTGGACAG
Seq A exon
GGTTTCACCGAACCCAGTGTGACCTCAGCTTCACTTGATTGCATCTACAAAGACCCTATCTTCAAGCAAGGTCACAGTCACAGGTTCCGGGTGGACACGAACTTTAAGAGGACACTGTTCAAGCCCCTTTAAGAGTCTTCCCTGCTGTCTCAGAG
Seq C2 exon
GTGTGGGGCACCCACTGACAATGCCACGCTCCTTCCTGGTGAAGAGCAAGAAGGCTCACACCTACCACCAGCCCCGCACCCGGGAGGATGAGCTGCTTTGGCCGCTGGCCCTTGGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012772_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.471
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCGAGAGTCACGAATTGA
R:
GCCAAAGCAGCTCATCCTCC
Band lengths:
186-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development