BtaEX0015980 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95910988-95911957:-
Coord C1 exon
chr11:95911863-95911957
Coord A exon
chr11:95911395-95911495
Coord C2 exon
chr11:95910988-95911037
Length
101 bp
Sequences
Splice sites
3' ss Seq
GATCGAAACTGCCGTGGCAGGTG
3' ss Score
3.24
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGCTCGCCGGCCGGCCGTGGGGGCTGGTGACGCGGGCCGGCGCTCACGAGAGGCCCCGGAGGCGGGGCTCTGCCGGCTGCCCAGAGAGCGGCAG
Seq A exon
GTGGCTGGCCCCCCGAGCATTTGGCAGTCGTCTTCCAACTTTGCCGTCCTTTTTCTCAGCGATTTTCTGAATGTGAATCAAGGCTCTGGGGTTCTGGCCAG
Seq C2 exon
GACAGAAAGCTTTGACCTCCAAGCTGTTTTAAATCTAATAGATAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development