BtaEX0016035 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006263 | GP2
Description
glycoprotein 2 (zymogen granule membrane) [Source:HGNC Symbol;Acc:HGNC:4441]
Coordinates
chr25:18113082-18114590:-
Coord C1 exon
chr25:18114480-18114590
Coord A exon
chr25:18113960-18113962
Coord C2 exon
chr25:18113082-18113299
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGATGTTCTTATCATCCCAGCAG
3' ss Score
4.6
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACCCTGCCACCGCGGAGGACAAGTGTGACAGGACCTGCCGCCCCGAGGAGGAGTGTCGCCTCGTCAGTGGCACCTGGGGCTGCTTCTGCAGACAGGACCTCAACGTCTCCG
Seq A exon
CAG
Seq C2 exon
ATGTGCACAGTTTGCAGCCTCAGCTGGACTGTGGGGACACAGAGATCAAAGTGTCACTGGACAAGTGTCTGCTGGGAAGTCTGGGTTTCGGAGATGAGGTCCATGCCTACCTGCGGGACGGGAACTGGAACTGCAGCAGCCTCAGGCAGAGTGAAGAGGAGAACTGGATATCTGTGACCAATCCCACCCAGGCTGGTGCCTGCGGAAACATTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006263-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0010018=Zona_pellucida=PU(24.7=86.3)
Main Inclusion Isoform:
ENSBTAT00000008217fB3068
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGGACCTCAACGTCTCC
R:
CTTCCCAGCAGACACTTGTCC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development