BtaEX0016418 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019915 | GSN
Description
gelsolin [Source:HGNC Symbol;Acc:HGNC:4620]
Coordinates
chr8:112578066-112611208:+
Coord C1 exon
chr8:112578066-112578130
Coord A exon
chr8:112591586-112591673
Coord C2 exon
chr8:112611004-112611208
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCTTGGCCCTTTCTTTACAGGTG
3' ss Score
11.71
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GCCGCCCGCAGCCAGCTGAGCACAGCTGGACCCAGCAGCAGCCGTCGCCAGCGCCGCAGCCGCAG
Seq A exon
GTGGTGCTGCTAAGCTCTCGAGCCGCGCTTTCACCTTGGTGCCAAGCCCTTCCGACGGAGCCGCCCTCTTCACTCACAGCCCCACAAG
Seq C2 exon
CCGGGCAGCATGGTGGTGGAACACCCCGAGTTCCTCAAGGCAGGGAAGGAGCCCGGCCTGCAGATCTGGCGTGTGGAGAAGTTCGACCTGGTTCCCGTGCCCCCCAACCTTTACGGAGACTTCTTCACAGGCGATGCCTATGTCATCCTGAAGACGGTGCAGCTGAGGAATGGGAACCTGCAGTATGACCTCCACTACTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019915-'0-14,'0-2,5-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0062617=Gelsolin=PU(50.0=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCACAGCTGGACCCAG
R:
AGTCTCCGTAAAGGTTGGGGG
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development