BtaEX0016458 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001132 | GTDC1
Description
Bos taurus glycosyltransferase-like domain containing 1 (GTDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076035]
Coordinates
chr2:52664742-52869103:+
Coord C1 exon
chr2:52664742-52664915
Coord A exon
chr2:52692203-52692333
Coord C2 exon
chr2:52868994-52869103
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTCATCCCTATCTTTTCTAGGAC
3' ss Score
11.47
5' ss Seq
TTGGTACTT
5' ss Score
3.19
Exon sequences
Seq C1 exon
CCTGGTGGCTGATGTGGTGGTATTCAACTCAGTTTTTAATATGGAGTCATTTCTCACTTCTATTGGAAAATTCATGAAGTTGATTCCTGATCACAGACCCAAGGATCTGGAAAGCATCATCAGACCCAAGTGCCAAGTTATTTACTTTCCCATCAGGTTTCCTGACGTGAGCAG
Seq A exon
GACAGATGTATGGGATGAGTATGGAAATTAAGAAAGAAGAAAATGGGGATCAAGTTGAAGAAAAGTAGAATGCTTTGAATTGAGAGATTCAGTCAGTGGAAAAAGGAAAAGAAGACTGATGGTTTCACTTG
Seq C2 exon
GGAGCATGATAAAGATCCAGAGAGTTTTTTTAAGGTATTGATGCATCTTAAGGACTTAGGACTCAATTTCCACGTATCTGTCCTTGGAGAAACCTTCACAGATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001132_MULTIEX2-1/5=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PD(30.5=86.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000001505fB3145
Main Skipping Isoform:
ENSBTAT00000001505fB3147
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGATGTGGTGGTATTCA
R:
CTCCAAGGACAGATACGTGGA
Band lengths:
258-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development