BtaEX0016530 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021373 | GTF3C5
Description
general transcription factor IIIC, polypeptide 5, 63kDa [Source:HGNC Symbol;Acc:HGNC:4668]
Coordinates
chr11:103094426-103095062:+
Coord C1 exon
chr11:103094426-103094540
Coord A exon
chr11:103094750-103094809
Coord C2 exon
chr11:103094982-103095062
Length
60 bp
Sequences
Splice sites
3' ss Seq
GTCCTTCTGTTCTTCCACAGTTA
3' ss Score
10.82
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ATAACAGGCCCCTGGAGAAGCCTGTGGATTCGATTTGGATATGACCCCCGAAAACGCCCAGAGGCCAAGATTTATCAAGTGCTTGACTTCCGAATCCGATGTGGAATGAAATACG
Seq A exon
TTACTTGTGGCTCCTGCCGTGCAGGCCAGGCGTCCGGTCAGTGTCCGTCCCCCGCCTGCG
Seq C2 exon
GTTACGCCCCCAGCGACATGCCCGTCAAGGCCAAGCGCAGCACCTACAACTACAGCCTCCCCATCACCGTCAAAAAGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021373_MULTIEX2-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF097344=Tau95=PD(10.0=76.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000028493fB3162
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATATGACCCCCGAAAACGC
R:
GTAGTTGTAGGTGCTGCGCTT
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development